Nagle MF, Yuan J, Kaur D, Ma C, Peremyslova E, Jiang Y, Zahl B, Niño de Rivera A, Muchero W, Li F, Strauss SH. Genome-wide association study and network analysis of in vitro transformation in Populus trichocarpa support key roles of diverse signaling and metabolic pathways. New Phytologist. 2024

Nagle MF, Yuan J, Kaur D, Ma C, Peremyslova E, Jiang Y, Niño de Rivera A, Jawdy S, Chen JG, Feng K, Yates TB, Tuskan GA, Muchero W, Li F, Strauss SH. GWAS supported by computer vision identifies large numbers of candidate regulators of in planta regeneration in Populus trichocarpa. G3: Genes, Genomes, Genetics. 2024

Nagle MF, Yuan J, Kaur D, Ma C, Peremyslova E, Jiang Y, Zahl B, Niño de Rivera, A, Muchero W, Li F, Strauss SH. GWAS identifies candidate genes controlling adventitious rooting in Populus trichocarpa. Horticulture Research, 2023.

Nagle MF, Nahata SS, Zahl B, Niño de Rivera A, Tacker XV, Elorriaga E, Ma C, Goralogia GS, Klocko AL, Gordon M, Joshi S, Strauss SH. Knockout of floral and meiosis genes using CRISPR/Cas9 produces male‐sterility in Eucalyptus without impacts on vegetative growth. Plant Direct, 2023.

Ma C, Duan C, Jiang Y, Nagle MF, Peremyslova E, Goddard A, Strauss SH. Factors affecting in vitro regeneration in the model tree Populus trichocarpa: II. Heritability estimates, correlations among explant types, and genetic interactions with treatments among wild genotypes. In Vitro Cellular & Developmental Biology-Plant, 2022.

Ma C, Goddard A, Peremyslova E, Duan C, Jiang Y, Nagle MF, Strauss SH. Factors affecting in vitro regeneration in the model tree Populus trichocarpa I. Medium, environment, and hormone controls on organogenesis. In Vitro Cellular & Developmental Biology-Plant, 2022.

Yuan J, Kaur D, Zhou Z, Nagle MF, Kiddle NG, Doshi NA, Behnoudfar A, Peremyslova E, Ma C, Strauss SH, Li F. Robust high-throughput phenotyping with deep segmentation enabled by a web-based annotator. Plant Phenomics, 2022.

Goralogia G, Howe G, Brunner M, Helliwell E, Nagle MF, Ma C, Lu H, Goddard A, Magnuson A, Klocko A, Strauss SH. Overexpression of SHORT VEGETATIVE PHASE-LIKE (SVL) in Populus delays onset and reduces abundance of flowering in field-grown trees. Horticulture Research, 2021.

Nagle MF, Déjardin A, Pilate G, Strauss SH. Opportunities for innovation in genetic transformation of forest trees. Frontiers in Plant Science, 2018.

Nagle MF, LeBoldus J, Klocko A. Host‐Induced Gene Silencing for Pest/Pathogen Control. Encyclopedia of Life Sciences, 2017.